Creates an antigenic map from an input data frame that can be used to calculate cross reactivity. This will end up being an NxN matrix, where there are N strains circulating.

melt_antigenic_coords(anti.map.in)

Arguments

anti.map.in

can either be a 1D antigenic line to calculate distance from, or a two dimensional matrix with x and y coordinates on an antigenic map

Value

the euclidean antigenic distance between each pair of viruses in anti.map.in