Get total number of infections

Source: R/analysis.R

Finds the total number of infections for each iteration of an MCMC chain

get_total_number_infections(inf_chain, pad_chain = TRUE)

Arguments

inf_chain

the data table with infection history samples from serosolver
pad_chain

if TRUE, pads the infection history MCMC chain to have entries for non-infection events

Value

a data table

Examples

if (FALSE) {
inf_chain <- load_infection_chains(thin=10,burnin=5000,chain_subset=1:3)
n_infs <- get_total_number_infections(inf_chain$chain, pad_chain=FALSE)
}